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In order to check model definitions of signs of the Stokes vector and azimuth angles, you should first run only case A1.
Publication: C. Emde, V. Barlakas, C. Cornet, F. Evans, S. Korkin, Y. Ota, L. C.-Labonnote, A. Lyapustin, A. Macke, B. Mayer, and M. Wendisch. IPRT polarized radiative transfer model intercomparison project – phase A. J. Quant. Spectrosc. Radiat. Transfer, 164(0):8-36, 2015. link
Publication: C. Emde, V. Barlakas, C. Cornet, F. Evans, Z. Wang, L. C.-Labonotte, A. Macke, B. Mayer, and M. Wendisch. IPRT polarized radiative transfer model intercomparison project – three-dimensional test cases (phase B). J. Quant. Spectrosc. Radiat. Transfer, 209:19-44, 2018.link
The results of all cases (D and E) shall be included in a single netcdf file using this template: iprt_phase3_XXX.nc.